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Urinalysis with Microscopy

Dipstick plus microscopic examination of the urine sediment — the single most informative bedside test in nephrology, performed at Remix Medical in Houston, TX.

A urinalysis is one of the oldest tests in medicine and still one of the most informative. A few milliliters of urine, examined properly, can reveal kidney inflammation, infection, stone risk, and protein loss — often before any blood test turns abnormal.

What we look for

The test has two parts. The dipstick screens chemically for protein, blood, glucose, nitrites, and white cells. The microscopic examination is where the real information lives: we spin the sample down and look at what settles out.

Red blood cells. Their shape matters enormously. Dysmorphic red cells — misshapen, with irregular membranes — indicate the blood came through the glomerulus, pointing toward glomerular disease. Normally shaped red cells suggest bleeding lower in the urinary tract: a stone, an infection, or something requiring urologic evaluation.

Casts. These are cylindrical molds formed in the kidney tubules. Red cell casts are essentially diagnostic of glomerulonephritis. White cell casts point to interstitial nephritis or pyelonephritis. Muddy brown granular casts appear in acute tubular necrosis.

Crystals. Calcium oxalate, uric acid, and cystine crystals each suggest a different stone-forming pathway and a different prevention strategy.

Protein. The dipstick detects albumin but misses light chains, which is why we order a separate albumin-to-creatinine ratio and, when myeloma is a consideration, a urine protein electrophoresis.

Why the microscopy matters

Many laboratories report only the dipstick. That is adequate for screening a healthy patient and inadequate for evaluating one with abnormal kidney function.

The difference between dysmorphic and normal red blood cells is the difference between a nephrology workup and a urology referral. The presence of red cell casts changes a case from unexplained hematuria to suspected glomerulonephritis — a different disease with a different urgency. That distinction cannot be made from a dipstick.

Collecting the sample

A clean-catch midstream sample. Begin urinating, stop, then collect. This reduces contamination from skin and genital flora, which otherwise produces false positives for white cells and bacteria.

A first-morning sample is most concentrated and therefore most sensitive. If you are menstruating, tell us — menstrual blood is a common and avoidable source of a falsely positive result.

How it's performed

A clean-catch midstream urine sample is analyzed in two stages. A reagent dipstick screens for protein, blood, glucose, ketones, nitrites, leukocyte esterase, pH, and specific gravity. The sample is then centrifuged and the sediment examined under the microscope for red and white blood cells, cellular casts, crystals, and bacteria. Red cell morphology is assessed specifically: dysmorphic erythrocytes indicate glomerular bleeding, while isomorphic erythrocytes suggest a lower urinary tract source.

How to prepare

A first-morning sample is preferred because it is most concentrated. Collect a clean-catch midstream specimen: begin urinating, stop, then collect. Inform your physician if you are menstruating, as menstrual blood is a frequent cause of false-positive hematuria. Vigorous exercise in the preceding 24 hours can transiently produce protein and blood in the urine.

Outcome

Identification of glomerular versus non-glomerular hematuria, detection of cellular casts that establish glomerulonephritis or interstitial nephritis, characterization of crystals that guide stone prevention, and quantification of proteinuria. Findings frequently determine whether a patient needs a nephrology workup, a urology referral, or a kidney biopsy.

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Your physician

Your nephrology at Remix Medical.

Every clinician at Remix Medical is board-certified and owns the practice — so the physician in your exam room is the one making decisions about your care.

  • Uday Khosla, MD

    Nephrologist

    Montrose — Upper Kirby · Limestone County — Groesbeck · Katy — Grand Parkway · East Houston — Woodforest

    Board certifiedAccepting newBook
Specialty
Nephrology & Hypertension
Type
Diagnostic test
CPT code
81000, 81001, 81002, 81003, 81015 (urinalysis, by instrument type and microscopy); 87086 (urine culture, quantitative); 84156 (protein, urine, total); 82570 (creatinine, other source)

Also known as: Urine Test, UA, Urine Analysis, Urine Sediment Examination, Microscopic Urinalysis, Urine Microscopy

This page is for general education and is not a substitute for medical advice. Whether a given procedure is appropriate depends on your individual evaluation. Contact a Remix Medical clinician to discuss your care.

Updated July 9, 2026.

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